WhiteRotV1, Main, Exploration, bibRecord, 000198

Transcriptome analysis of differential gene expression in Dichomitus squalens during interspecific mycelial interactions and the potential link with laccase induction.

Identifieur interne : 000198 ( Main/Exploration ); précédent : 000197; suivant : 000199

Transcriptome analysis of differential gene expression in Dichomitus squalens during interspecific mycelial interactions and the potential link with laccase induction.

Auteurs : Zixuan Zhong [République populaire de Chine] ; Nannan Li [République populaire de Chine] ; Binghui He [République populaire de Chine] ; Yasuo Igarashi [République populaire de Chine] ; Feng Luo [République populaire de Chine]

Source :

Journal of microbiology (Seoul, Korea) [ 1976-3794 ] ; 2019.

RBID : pubmed:30552631

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Analyse de séquence d'ARN (MeSH), Espèces réactives de l'oxygène (métabolisme), Gènes fongiques (génétique), Interactions microbiennes (physiologie), Laccase (biosynthèse), Laccase (génétique), Mycelium (enzymologie), Mycelium (génétique), Mycelium (physiologie), Nutriments (MeSH), Pleurotus (physiologie), Polyporaceae (enzymologie), Polyporaceae (génétique), Régulation de l'expression des gènes codant pour des enzymes (MeSH), Régulation de l'expression des gènes fongiques (MeSH), Stress oxydatif (MeSH), Techniques de coculture (MeSH), Trametes (physiologie), Transcriptome (MeSH).
MESH :
- biosynthèse : Laccase.
- enzymologie : Mycelium, Polyporaceae.
- génétique : Gènes fongiques, Laccase, Mycelium, Polyporaceae.
- métabolisme : Espèces réactives de l'oxygène.
- physiologie : Interactions microbiennes, Mycelium, Pleurotus, Trametes.
- Analyse de profil d'expression de gènes, Analyse de séquence d'ARN, Nutriments, Régulation de l'expression des gènes codant pour des enzymes, Régulation de l'expression des gènes fongiques, Stress oxydatif, Techniques de coculture, Transcriptome.

English descriptors

KwdEn :
- Coculture Techniques (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Enzymologic (MeSH), Gene Expression Regulation, Fungal (MeSH), Genes, Fungal (genetics), Laccase (biosynthesis), Laccase (genetics), Microbial Interactions (physiology), Mycelium (enzymology), Mycelium (genetics), Mycelium (physiology), Nutrients (MeSH), Oxidative Stress (MeSH), Pleurotus (physiology), Polyporaceae (enzymology), Polyporaceae (genetics), Reactive Oxygen Species (metabolism), Sequence Analysis, RNA (MeSH), Trametes (physiology), Transcriptome (MeSH).
MESH :
- chemical , biosynthesis : Laccase.
- enzymology : Mycelium, Polyporaceae.
- genetics : Genes, Fungal, Laccase, Mycelium, Polyporaceae.
- chemical , metabolism : Reactive Oxygen Species.
- physiology : Microbial Interactions, Mycelium, Pleurotus, Trametes.
- Coculture Techniques, Gene Expression Profiling, Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Fungal, Nutrients, Oxidative Stress, Sequence Analysis, RNA, Transcriptome.

Abstract

Interspecific mycelial interactions between white rot fungi are always accompanied by an increased production of laccase. In this study, the potential of the white rot fungus Dichomitus squalens to enhance laccase production during interactions with two other white rot fungi, Trametes versicolor or Pleurotus ostreatus, was assessed. To probe the mechanism of laccase induction and the role that laccase plays during combative interaction, we analyzed the differential gene expression profile of the laccase induction response to stressful conditions during fungal interaction. We further confirmed the expression patterns of 16 selected genes by qRT-PCR analysis. We noted that many differentially expressed genes (DEGs) encoded proteins that were involved in xenobiotic detoxification and reactive oxygen species (ROS) generation or reduction, including aldo/keto reductase, glutathione S-transferases, cytochrome P450 enzymes, alcohol oxidases and dehydrogenase, manganese peroxidase and laccase. Furthermore, many DEG-encoded proteins were involved in antagonistic mechanisms of nutrient acquisition and antifungal properties, including glycoside hydrolase, glucanase, chitinase and terpenoid synthases. DEG analyses effectively revealed that laccase induction was likely caused by protective responses to oxidative stress and nutrient competition during interspecific fungal interactions.

DOI: 10.1007/s12275-019-8398-y
PubMed: 30552631

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000317
to stream Main, to step Curation: 000317

Le document en format XML

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<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Enzymologic (MeSH)</term>
<term>Gene Expression Regulation, Fungal (MeSH)</term>
<term>Genes, Fungal (genetics)</term>
<term>Laccase (biosynthesis)</term>
<term>Laccase (genetics)</term>
<term>Microbial Interactions (physiology)</term>
<term>Mycelium (enzymology)</term>
<term>Mycelium (genetics)</term>
<term>Mycelium (physiology)</term>
<term>Nutrients (MeSH)</term>
<term>Oxidative Stress (MeSH)</term>
<term>Pleurotus (physiology)</term>
<term>Polyporaceae (enzymology)</term>
<term>Polyporaceae (genetics)</term>
<term>Reactive Oxygen Species (metabolism)</term>
<term>Sequence Analysis, RNA (MeSH)</term>
<term>Trametes (physiology)</term>
<term>Transcriptome (MeSH)</term>
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<term>Analyse de séquence d'ARN (MeSH)</term>
<term>Espèces réactives de l'oxygène (métabolisme)</term>
<term>Gènes fongiques (génétique)</term>
<term>Interactions microbiennes (physiologie)</term>
<term>Laccase (biosynthèse)</term>
<term>Laccase (génétique)</term>
<term>Mycelium (enzymologie)</term>
<term>Mycelium (génétique)</term>
<term>Mycelium (physiologie)</term>
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<term>Techniques de coculture (MeSH)</term>
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<term>Transcriptome (MeSH)</term>
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<keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>Laccase</term>
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<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Mycelium</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genes, Fungal</term>
<term>Laccase</term>
<term>Mycelium</term>
<term>Polyporaceae</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Gènes fongiques</term>
<term>Laccase</term>
<term>Mycelium</term>
<term>Polyporaceae</term>
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<front><div type="abstract" xml:lang="en">Interspecific mycelial interactions between white rot fungi are always accompanied by an increased production of laccase. In this study, the potential of the white rot fungus Dichomitus squalens to enhance laccase production during interactions with two other white rot fungi, Trametes versicolor or Pleurotus ostreatus, was assessed. To probe the mechanism of laccase induction and the role that laccase plays during combative interaction, we analyzed the differential gene expression profile of the laccase induction response to stressful conditions during fungal interaction. We further confirmed the expression patterns of 16 selected genes by qRT-PCR analysis. We noted that many differentially expressed genes (DEGs) encoded proteins that were involved in xenobiotic detoxification and reactive oxygen species (ROS) generation or reduction, including aldo/keto reductase, glutathione S-transferases, cytochrome P450 enzymes, alcohol oxidases and dehydrogenase, manganese peroxidase and laccase. Furthermore, many DEG-encoded proteins were involved in antagonistic mechanisms of nutrient acquisition and antifungal properties, including glycoside hydrolase, glucanase, chitinase and terpenoid synthases. DEG analyses effectively revealed that laccase induction was likely caused by protective responses to oxidative stress and nutrient competition during interspecific fungal interactions.</div>
</front>
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<DateCompleted><Year>2019</Year>
<Month>02</Month>
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<ArticleTitle>Transcriptome analysis of differential gene expression in Dichomitus squalens during interspecific mycelial interactions and the potential link with laccase induction.</ArticleTitle>
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<Abstract><AbstractText>Interspecific mycelial interactions between white rot fungi are always accompanied by an increased production of laccase. In this study, the potential of the white rot fungus Dichomitus squalens to enhance laccase production during interactions with two other white rot fungi, Trametes versicolor or Pleurotus ostreatus, was assessed. To probe the mechanism of laccase induction and the role that laccase plays during combative interaction, we analyzed the differential gene expression profile of the laccase induction response to stressful conditions during fungal interaction. We further confirmed the expression patterns of 16 selected genes by qRT-PCR analysis. We noted that many differentially expressed genes (DEGs) encoded proteins that were involved in xenobiotic detoxification and reactive oxygen species (ROS) generation or reduction, including aldo/keto reductase, glutathione S-transferases, cytochrome P450 enzymes, alcohol oxidases and dehydrogenase, manganese peroxidase and laccase. Furthermore, many DEG-encoded proteins were involved in antagonistic mechanisms of nutrient acquisition and antifungal properties, including glycoside hydrolase, glucanase, chitinase and terpenoid synthases. DEG analyses effectively revealed that laccase induction was likely caused by protective responses to oxidative stress and nutrient competition during interspecific fungal interactions.</AbstractText>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D017382">Reactive Oxygen Species</NameOfSubstance>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D000078622" MajorTopicYN="N">Nutrients</DescriptorName>
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<MeshHeading><DescriptorName UI="D018384" MajorTopicYN="N">Oxidative Stress</DescriptorName>
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<MeshHeading><DescriptorName UI="D020076" MajorTopicYN="N">Pleurotus</DescriptorName>
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<MeshHeading><DescriptorName UI="D011124" MajorTopicYN="N">Polyporaceae</DescriptorName>
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<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017382" MajorTopicYN="N">Reactive Oxygen Species</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName>
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<MeshHeading><DescriptorName UI="D055454" MajorTopicYN="N">Trametes</DescriptorName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName>
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<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Dichomitus squalens</Keyword>
<Keyword MajorTopicYN="N">laccase</Keyword>
<Keyword MajorTopicYN="N">mycelial interactions</Keyword>
<Keyword MajorTopicYN="N">transcriptome analysis</Keyword>
<Keyword MajorTopicYN="N">white rot fungi</Keyword>
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<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year>
<Month>07</Month>
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Transcriptome analysis of differential gene expression in Dichomitus squalens during interspecific mycelial interactions and the potential link with laccase induction.

Transcriptome analysis of differential gene expression in Dichomitus squalens during interspecific mycelial interactions and the potential link with laccase induction.

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